Datasets:
Sergey Kuznetsov
commited on
Commit
·
4db5532
1
Parent(s):
eef4141
First version of the IXI2D dataset
Browse files- .gitattributes +2 -0
- .gitignore +3 -0
- README.md +117 -0
- data/train.zip +3 -0
- data/valid.zip +3 -0
- ixi2d.py +65 -0
.gitattributes
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@@ -53,3 +53,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.jpg filter=lfs diff=lfs merge=lfs -text
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*.jpeg filter=lfs diff=lfs merge=lfs -text
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*.webp filter=lfs diff=lfs merge=lfs -text
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*.jpg filter=lfs diff=lfs merge=lfs -text
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*.jpeg filter=lfs diff=lfs merge=lfs -text
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*.webp filter=lfs diff=lfs merge=lfs -text
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data/train.zip filter=lfs diff=lfs merge=lfs -text
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data/valid.zip filter=lfs diff=lfs merge=lfs -text
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.gitignore
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__pycache__/
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.DS_Store
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.idea
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README.md
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---
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annotations_creators:
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- no-annotation
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language: []
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language_creators:
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- expert-generated
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license:
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- cc-by-sa-3.0
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multilinguality: []
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pretty_name: IXI-2D
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size_categories:
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- 10K<n<100K
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source_datasets:
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- original
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tags:
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- medical imaging
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- mri
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- brains
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task_categories:
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- unconditional-image-generation
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task_ids: []
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dataset_info:
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features:
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- name: image
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dtype: image
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splits:
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- name: train
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num_bytes: 111340223
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num_examples: 25447
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- name: validation
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num_bytes: 12463820
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num_examples: 2828
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download_size: 133058419
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dataset_size: 123804043
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---
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# Dataset Card for IXI2D
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### Dataset Summary
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This IXI2D dataset contains around 28000 2D slices extracted from 600 MRI images of healthy subjects. Each MRI volume was skull-stripped, white matter normalized and registered to the *'fsaverage'* template using affine transformation.
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## Dataset Structure
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### Data Instances
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[More Information Needed]
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### Data Fields
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[More Information Needed]
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### Data Splits
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[More Information Needed]
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## Dataset Creation
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### Curation Rationale
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[More Information Needed]
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### Source Data
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#### Initial Data Collection and Normalization
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[More Information Needed]
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#### Who are the source language producers?
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[More Information Needed]
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### Annotations
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#### Annotation process
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[More Information Needed]
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#### Who are the annotators?
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[More Information Needed]
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### Personal and Sensitive Information
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[More Information Needed]
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## Considerations for Using the Data
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### Social Impact of Dataset
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[More Information Needed]
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### Discussion of Biases
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[More Information Needed]
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### Other Known Limitations
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[More Information Needed]
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## Additional Information
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### Dataset Curators
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[More Information Needed]
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### Licensing Information
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[More Information Needed]
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### Citation Information
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[More Information Needed]
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### Contributions
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Thanks to [@iamkzntsv](https://github.com/iamkzntsv) for adding this dataset.
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data/train.zip
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version https://git-lfs.github.com/spec/v1
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oid sha256:d55cd05eda000426dec632d2e0f4af3fcd20c141fa4f035eb37af0b0e8c31dba
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size 119677698
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data/valid.zip
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version https://git-lfs.github.com/spec/v1
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oid sha256:2ec4bf194ce7d94b206922596c3d43e26f9eefa31bdc4d457c5f74a37a8c9a0d
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size 13380721
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ixi2d.py
ADDED
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import datasets
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logger = datasets.logging.get_logger(__name__)
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_HOMEPAGE = 'https://brain-development.org/ixi-dataset/'
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_DESCRIPTION = (
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"This dataset contains around 28000 2D slices extracted from 600 MRI images of healthy subjects."
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" Each MRI volume was skull-stripped, white matter normalized and registered to the 'fsaverage' template using affine transformation. "
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)
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_URLS = {
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'train': 'data/train.zip',
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'valid': 'data/valid.zip'
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}
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_LICENSE = """\
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LICENSE AGREEMENT
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=================
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- The IXI-2D dataset consists of images from IXI Dataset [1] which are
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property of the Biomedical Image Analysis Group, Imperial College London. Any use beyond
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scientific fair use must be negotiated with the respective picture owners
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according to the Creative Commons license [2].
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[1] https://brain-development.org/ixi-dataset/
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[2] https://creativecommons.org/licenses/by-sa/3.0/legalcode
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"""
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class IXI2D(datasets.GeneratorBasedBuilder):
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"""Food-101 Images dataset"""
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def _info(self):
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return datasets.DatasetInfo(
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features=datasets.Features(
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{
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"image": datasets.Image(),
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}
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),
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homepage=_HOMEPAGE,
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description=_DESCRIPTION,
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license=_LICENSE
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)
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def _split_generators(self, dl_manager):
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archive_path = dl_manager.download(_URLS)
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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gen_kwargs={
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"images": dl_manager.iter_archive(archive_path['train']),
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},
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),
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datasets.SplitGenerator(
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name=datasets.Split.VALIDATION,
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gen_kwargs={
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"images": dl_manager.iter_archive(archive_path['valid']),
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},
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),
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]
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def _generate_examples(self, images):
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for file_path, file_obj in images:
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yield file_path, {
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"image": {"path": file_path, "bytes": file_obj.read()},
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}
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