Datasets:
fix documented subset name
Browse filescorrect in configs and dataset structure, was simply mis-referenced
README.md
CHANGED
|
@@ -27,7 +27,7 @@ configs:
|
|
| 27 |
data_files:
|
| 28 |
- "group_images/metadata.csv"
|
| 29 |
- "group_images/*.jpg"
|
| 30 |
-
- config_name:
|
| 31 |
data_files:
|
| 32 |
- "group_images_resized/metadata.csv"
|
| 33 |
- "group_images_resized/*.jpg"
|
|
@@ -80,7 +80,7 @@ The individual images were segmented out based on scaling the elytra measurement
|
|
| 80 |
This dataset has 4 subsets, which are described in greater detail below in [Data Instances](#data-instances):
|
| 81 |
|
| 82 |
1. `group_images`: all 577 orignal full size images.
|
| 83 |
-
2. `
|
| 84 |
3. `individual_specimens`: all 11,654 individuals from the `group_images`, segmented _manually_ to have one image per individual.
|
| 85 |
4. `separate segmented splits`: 7,070 individual beetle images segmented from the `group_images` as part of [BeetlePalooza 2024](https://doi.org/10.5281/zenodo.15540300). These images were organized into an 80-20 train-test split and are in the `Separate_segmented_train_test_splits_80_20/` directory.
|
| 86 |
|
|
@@ -128,7 +128,7 @@ This dataset has 4 subsets, which are described in greater detail below in [Data
|
|
| 128 |
This dataset has 4 subsets:
|
| 129 |
|
| 130 |
1. `group_images`: 577 images of multiple beetles in a reasonably regular pattern (see sample image below). Each of these images contains a centimeter-based scalebar and a barcode representing the sample (collection of beetles in the image). Each row in `BeetleMeasurements.csv` corresponds to a measurement of the elytra (length or width) of an individual beetle.
|
| 131 |
-
2. `
|
| 132 |
3. `individual_specimens`: 11,654 manually segmented images of all individual specimens photographed in the `group_images` subset. These images are split between two folders (`part_000/` and `part_001/`), and are labeled based on the group image to which they belong (`pictureID`), then the associated specimen when labeling within the tray from left to right, top to bottom (as if reading a book). Metadata for these images can be aligned using the `individual_specimens/metadata.csv`.
|
| 133 |
4. `separate segmented splits`: 7,070 individual beetle images segmented from the `group_images`. This subset encompasses 11 different species of beetles. There are 12 folders, but _melanarius melanarius_ is a subspecies designation for _melanarius_, so it should not be considered a species distinction. These images are divided into an 80-20 train-test split, and further separated into subfolders based on their species (as shown below). These images are all contained in the `Separate_segmented_train_test_splits_80_20/` directory, and were generated as part of [BeetlePalooza 2024](https://doi.org/10.5281/zenodo.15540300). See [`Separate_segmented_train_test_splits_80_20/README`](Separate_segmented_train_test_splits_80_20/README.md) for more details.
|
| 134 |
- The code used to produce the images and splits in `Separate_segmented_train_test_splits_80_20/` is provided [here](https://github.com/Imageomics/2018-NEON-beetles-processing/blob/main/notebooks/Beetle_Palooza_image_separation.ipynb).
|
|
|
|
| 27 |
data_files:
|
| 28 |
- "group_images/metadata.csv"
|
| 29 |
- "group_images/*.jpg"
|
| 30 |
+
- config_name: group_images_resized
|
| 31 |
data_files:
|
| 32 |
- "group_images_resized/metadata.csv"
|
| 33 |
- "group_images_resized/*.jpg"
|
|
|
|
| 80 |
This dataset has 4 subsets, which are described in greater detail below in [Data Instances](#data-instances):
|
| 81 |
|
| 82 |
1. `group_images`: all 577 orignal full size images.
|
| 83 |
+
2. `group_images_resized`: all 577 resized (approximately 1MB) group images used for annotation in Notes from Nature (1MB was the size limitation imposed by the software); aspect ratio was maintained in the resize.
|
| 84 |
3. `individual_specimens`: all 11,654 individuals from the `group_images`, segmented _manually_ to have one image per individual.
|
| 85 |
4. `separate segmented splits`: 7,070 individual beetle images segmented from the `group_images` as part of [BeetlePalooza 2024](https://doi.org/10.5281/zenodo.15540300). These images were organized into an 80-20 train-test split and are in the `Separate_segmented_train_test_splits_80_20/` directory.
|
| 86 |
|
|
|
|
| 128 |
This dataset has 4 subsets:
|
| 129 |
|
| 130 |
1. `group_images`: 577 images of multiple beetles in a reasonably regular pattern (see sample image below). Each of these images contains a centimeter-based scalebar and a barcode representing the sample (collection of beetles in the image). Each row in `BeetleMeasurements.csv` corresponds to a measurement of the elytra (length or width) of an individual beetle.
|
| 131 |
+
2. `group_images_resized`: All 577 `group_images` resized to the dimensions required for Notes from Nature annotation. These resized images align with the individual measurements provided in `BeetleMeasurements.csv`, unlike the images in the `group_images` subset, which require conversion that the pixel locations are converted to match the full size images.
|
| 132 |
3. `individual_specimens`: 11,654 manually segmented images of all individual specimens photographed in the `group_images` subset. These images are split between two folders (`part_000/` and `part_001/`), and are labeled based on the group image to which they belong (`pictureID`), then the associated specimen when labeling within the tray from left to right, top to bottom (as if reading a book). Metadata for these images can be aligned using the `individual_specimens/metadata.csv`.
|
| 133 |
4. `separate segmented splits`: 7,070 individual beetle images segmented from the `group_images`. This subset encompasses 11 different species of beetles. There are 12 folders, but _melanarius melanarius_ is a subspecies designation for _melanarius_, so it should not be considered a species distinction. These images are divided into an 80-20 train-test split, and further separated into subfolders based on their species (as shown below). These images are all contained in the `Separate_segmented_train_test_splits_80_20/` directory, and were generated as part of [BeetlePalooza 2024](https://doi.org/10.5281/zenodo.15540300). See [`Separate_segmented_train_test_splits_80_20/README`](Separate_segmented_train_test_splits_80_20/README.md) for more details.
|
| 134 |
- The code used to produce the images and splits in `Separate_segmented_train_test_splits_80_20/` is provided [here](https://github.com/Imageomics/2018-NEON-beetles-processing/blob/main/notebooks/Beetle_Palooza_image_separation.ipynb).
|