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Metric,Prostate_Cancer,Non_Cancerous
Dataset_Type,Tumor samples,Benign samples
Total_Cells,30932,12205
Total_Genes,846,779
Number_of_Samples,7,7
Number_of_Clusters,14,14
Seurat_Version,5.1.0,5.1.0
Normalization_Method,LogNormalize + SCTransform,LogNormalize + SCTransform
Integration_Method,Canonical Correlation Analysis,Canonical Correlation Analysis
Dimensionality_Reduction,PCA + UMAP,PCA + UMAP
Clustering_Resolution,0.5,0.5
Variable_Features_Count,2000 (VST method),2000 (VST method)
PCA_Dimensions_Used,01:15,01:15
UMAP_Metric,Cosine,Cosine
Quality_Control_Applied,Yes (multi-step),Yes (multi-step)
Cell_Cycle_Regression,Yes (S.Score + G2M.Score),Yes (S.Score + G2M.Score)
Doublet_Removal,Yes (scDblFinder),Yes (scDblFinder)
Batch_Correction,Yes (SCTransform integration),Yes (SCTransform integration)
Min_Features_Per_Cell,>500,>500
Ribosomal_Filter_Percentile,90th percentile,90th percentile
Mitochondrial_Filter_Percentile,90th percentile,90th percentile
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