src/transformers/models/biogpt/modeling_biogpt.py/BioGptModel/forward
class BioGptModel:    def forward(
        self,
        input_ids: Optional[torch.LongTensor] = None,
        attention_mask: Optional[torch.FloatTensor] = None,
        head_mask: Optional[torch.FloatTensor] = None,
        inputs_embeds: Optional[torch.FloatTensor] = None,
        past_key_values: Optional[Tuple[Tuple[torch.Tensor]]] = None,
        use_cache: Optional[bool] = None,
        output_attentions: Optional[bool] = None,
        output_hidden_states: Optional[bool] = None,
        return_dict: Optional[bool] = None,
    ) -> Union[Tuple, BaseModelOutputWithPastAndCrossAttentions]:
        output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
        output_hidden_states = (
            output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
        )
        use_cache = use_cache if use_cache is not None else self.config.use_cache
        return_dict = return_dict if return_dict is not None else self.config.use_return_dict

        # retrieve input_ids and inputs_embeds
        if input_ids is not None and inputs_embeds is not None:
            raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
        elif input_ids is not None:
            input = input_ids
            input_shape = input.size()
        elif inputs_embeds is not None:
            input_shape = inputs_embeds.size()[:-1]
            input = inputs_embeds[:, :, -1]
        else:
            raise ValueError("You have to specify either input_ids or inputs_embeds")

        # past_key_values_length
        past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0

        if inputs_embeds is None:
            inputs_embeds = self.embed_tokens(input) * self.embed_scale

        if attention_mask is None:
            attention_mask = torch.ones(inputs_embeds.shape[:2], dtype=torch.bool, device=inputs_embeds.device)
        # embed positions
        positions = self.embed_positions(attention_mask, past_key_values_length)

        attention_mask = self._prepare_decoder_attention_mask(
            attention_mask, input_shape, inputs_embeds, past_key_values_length
        )

        hidden_states = inputs_embeds + positions

        hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)

        if self.gradient_checkpointing and self.training:
            if use_cache:
                logger.warning_once(
                    "`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
                )
                use_cache = False

        all_hidden_states = () if output_hidden_states else None
        all_self_attns = () if output_attentions else None
        all_cross_attentions = None
        next_decoder_cache = () if use_cache else None

        for idx, decoder_layer in enumerate(self.layers):
            # add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
            if output_hidden_states:
                all_hidden_states += (hidden_states,)
            dropout_probability = random.uniform(0, 1)
            if self.training and (dropout_probability < self.layerdrop):
                continue

            past_key_value = past_key_values[idx] if past_key_values is not None else None

            if self.gradient_checkpointing and self.training:

                def create_custom_forward(module):
                    def custom_forward(*inputs):
                        # None for past_key_value
                        return module(*inputs, output_attentions, use_cache)

                    return custom_forward

                layer_outputs = torch.utils.checkpoint.checkpoint(
                    create_custom_forward(decoder_layer),
                    hidden_states,
                    attention_mask,
                    head_mask[idx] if head_mask is not None else None,
                    None,
                )
            else:
                layer_outputs = decoder_layer(
                    hidden_states,
                    attention_mask=attention_mask,
                    layer_head_mask=(head_mask[idx] if head_mask is not None else None),
                    past_key_value=past_key_value,
                    output_attentions=output_attentions,
                    use_cache=use_cache,
                )

            hidden_states = layer_outputs[0]

            if use_cache:
                next_decoder_cache += (layer_outputs[2 if output_attentions else 1],)

            if output_attentions:
                all_self_attns += (layer_outputs[1],)

        # add hidden states from the last decoder layer
        if output_hidden_states:
            all_hidden_states += (hidden_states,)

        hidden_states = self.layer_norm(hidden_states)

        next_cache = next_decoder_cache if use_cache else None

        if not return_dict:
            return tuple(
                v
                for v in [hidden_states, next_cache, all_hidden_states, all_self_attns, all_cross_attentions]
                if v is not None
            )
        return BaseModelOutputWithPastAndCrossAttentions(
            last_hidden_state=hidden_states,
            past_key_values=next_cache,
            hidden_states=all_hidden_states,
            attentions=all_self_attns,
            cross_attentions=all_cross_attentions,
        )