fix: add wget for dev mode

Dockerfile

@@ -6,10 +6,12 @@ RUN apt-get update && apt-get install -y \
     build-essential \
     curl \
     git \
+    wget \
     && rm -rf /var/lib/apt/lists/*
 
 COPY requirements.txt ./
 COPY src/ ./src/
+WORKDIR /app
 
 RUN pip3 install -r requirements.txt
 

allfiles.txt

@@ -0,0 +1,71 @@
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fix_lfs_all.sh

@@ -0,0 +1,103 @@
+#!/bin/bash
+# ============================================
+#  自动检测并修复 Git 大文件 / LFS 问题
+#  作者: Kai（StriMap 项目）
+#  功能:
+#    1. 自动安装 & 初始化 Git LFS
+#    2. 扫描 >10MB 文件，自动 LFS 追踪
+#    3. 重写历史并强制推送
+# ============================================
+
+set -e
+
+echo "🚀 [1/7] 检查 Git LFS..."
+if ! git lfs &>/dev/null; then
+    echo "❌ Git LFS 未安装，请先运行：conda install -c conda-forge git-lfs -y"
+    exit 1
+fi
+git lfs install
+
+echo "✅ Git LFS 初始化完成。"
+
+# --------------------------------------------
+# 2. 检查当前仓库根目录
+# --------------------------------------------
+ROOT_DIR=$(git rev-parse --show-toplevel 2>/dev/null || echo "")
+if [ -z "$ROOT_DIR" ]; then
+    echo "❌ 当前目录不是 Git 仓库，请进入正确的 repo 根目录。"
+    exit 1
+fi
+cd "$ROOT_DIR"
+echo "📁 仓库根目录: $ROOT_DIR"
+
+# --------------------------------------------
+# 3. 自动追踪常见大文件类型
+# --------------------------------------------
+echo "🚀 [2/7] 添加常见文件类型到 Git LFS..."
+git lfs track "*.pt" "*.pth" "*.bin" "*.npy" "*.npz" "*.pkl" "*.h5" "*.ckpt" "*.zarr" "*.fasta" "*.fa" "*.csv" "*.pdb"
+git add .gitattributes
+git commit -m "Auto-track common large file types with Git LFS" || true
+
+# --------------------------------------------
+# 4. 扫描当前工作区大文件 (>10MB)
+# --------------------------------------------
+echo "🔍 [3/7] 扫描当前工作区中超过 10MB 的文件..."
+find . -type f -size +10M -printf "%P\n" | sort -u > large_files.txt
+if [ ! -s large_files.txt ]; then
+    echo "✅ 当前工作区中没有超过 10MB 的文件。"
+else
+    echo "⚠️ 以下文件超过 10MB，将自动加入 LFS 追踪："
+    cat large_files.txt
+    while read f; do
+        git lfs track "$f"
+    done < large_files.txt
+    git add .gitattributes
+    git commit -m "Track detected large files with Git LFS" || true
+fi
+
+# --------------------------------------------
+# 5. 重写 Git 历史，使旧版本也变成 LFS 指针
+# --------------------------------------------
+echo "🚀 [4/7] 重写历史（git lfs migrate import --everything）..."
+git lfs migrate import --include="*.pt,*.pth,*.bin,*.npy,*.npz,*.pkl,*.h5,*.ckpt,*.zarr,*.fasta,*.fa,*.csv,*.pdb" --everything
+
+# --------------------------------------------
+# 6. 检查是否仍有大文件未迁移
+# --------------------------------------------
+echo "🔍 [5/7] 检查是否仍有历史大文件未迁移..."
+git rev-list --objects --all > allfiles.txt
+cat allfiles.txt | while read hash path; do
+  size=$(git cat-file -s "$hash" 2>/dev/null)
+  if [ "$size" -gt 10000000 ]; then
+    echo "$size bytes - $path"
+  fi
+done > remaining_large.txt || true
+
+if [ -s remaining_large.txt ]; then
+    echo "⚠️ 以下文件仍超过 10MB（可能未被 LFS 管理）："
+    cat remaining_large.txt
+else
+    echo "✅ 所有大文件已迁移至 LFS。"
+fi
+
+# --------------------------------------------
+# 7. 推送到远端
+# --------------------------------------------
+echo "🚀 [6/7] 准备推送到 Hugging Face..."
+echo "⚠️ 这将使用 --force 推送（会覆盖远端历史）。"
+read -p "是否继续？(yes/no): " CONFIRM
+if [ "$CONFIRM" != "yes" ]; then
+    echo "❌ 用户取消推送。"
+    exit 0
+fi
+
+git push origin --force --all
+git push origin --force --tags
+
+echo "✅ [7/7] 推送完成。请前往 Hugging Face 页面确认 'Stored with Git LFS' 标记。"
+
+# --------------------------------------------
+# 完成
+# --------------------------------------------
+echo "🎉 修复流程完成！"
+echo "如果下次新增大文件，请重新运行本脚本。"